rs33311654 SNP Detail

Summary

• ID
  rs33311654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35733278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGAGACACC CACCCACCTT CTTGATTCAG TAATCCCATG GCTCTGCTCT ACTTAGAGAA
  GAGCGTAATT GAGCCCTTCA AAGGCATCTA ACAATGGGGA TAAATTACTG TTTGACAGAG
  CCTGCGGATG CTTTCCGGTT ACTGACGCTG AGGCGTACGG TAGAGCGATG TGGGATGACA
  TTTGCGCCGT GAAGCCTTCG AAGGCCAGCA GAATTACAAT AGCCTGTGCA CTGGGAGAGA
  GGGCTGAAGC CCCATTTACA GGTGGGAAAG GTGGACATTA GCAGAAACCT CTTATATTTT
  Y
  TAAAATTTGT TTTTTTGGTT TTTTTTTTTT TTTTTTTTTT TTTTTTTAGC ATTACATCAT
  AAATAAAGCA GAACAAACTA CTCTTCCAAT TTATTCCCAA ACTACAAAAG GAATCTTCCC
  CCAACAGGTG AAGTCAGAGT TCTCTAAGAT GTGCTCAGGC TTGGGATATT ACCCAGCTGG
  GAGGACGCTG GCTTAACGTG CGTGAAGCCC TGGGTTCTAG TCTCAGCGCC ATATAAATCA
  GGTACGGTGA TACACATGTG TAATCCCAGC CCTCAGGAAG TAGAGGCAGA AGGATCAGAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45262669	mCV25108285	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33311654					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35733278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10829	predicted gene 10829			929 bp upstream
Rr367187	regulatory region 367187			1692 bp downstream
Rr367188	regulatory region 367188			1534 bp downstream
Rr555796	regulatory region 555796			978 bp distal
Rr555797	regulatory region 555797			1212 bp distal
Rr555798	regulatory region 555798			94 bp distal
Rr555799	regulatory region 555799			589 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant