rs33311828 SNP Detail

Summary

• ID
  rs33311828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121991047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC ATTTAAAAAT TAGATTACCA
  M
  CTGAAGTTTA AAAGAATCCC ATCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45263102	mCV24435051	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss147410355	ENSMUSSNP907166	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320487272	CHEV_2_121986302	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33311828					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121991047 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	1726 bp distal
Rr563917	regulatory region 563917	44 bp proximal
Rr563918	regulatory region 563918	145 bp proximal
Rr563919	regulatory region 563919	291 bp proximal
Rr563920	regulatory region 563920	900 bp proximal
Trim69	tripartite motif-containing 69	142 bp upstream
Tssr626	transcription start site region 626	130 bp upstream
Tssr19830	transcription start site region 19830	117 bp upstream
Tssr19831	transcription start site region 19831	135 bp upstream
Tssr19832	transcription start site region 19832	976 bp upstream