rs33312283 SNP Detail

Summary

• ID
  rs33312283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115106140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCAGAAGA AAGCAGGCAG AAACAGCAAA GGGGAGCTGG
  GGTTCAGCCC TCATGCAGAG ACAGAAGCCA AGGAGCTAAG AGCCAAGGAG GAAGTGAGAA
  R
  GGGGTCCCGC CCGAGCAGAA AGACTAAGGT AGGCAATGCT AGGCGGAAAC CAAAGTGTGT
  GCGCATCCAG AACCGGCAAA GCCAGCATCA GGGCGCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45763645	mCV24915791	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss149119770	ENSMUSSNP3752882	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321653985	CHEV_5_115418090	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33312283					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115106140 () rs orientation: forward

Symbol	Name	Function Class
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	662 bp upstream
Hnf1aos2	HNF1 homeobox A, opposite strand 2	742 bp upstream
Rr124128	regulatory region 124128	within coordinates
Rr618078	regulatory region 618078	1473 bp distal
Rr618079	regulatory region 618079	1337 bp distal
Rr618080	regulatory region 618080	within coordinates
Rr618081	regulatory region 618081	252 bp proximal
Rr618082	regulatory region 618082	1320 bp proximal
Tssr48194	transcription start site region 48194	678 bp upstream
Tssr48195	transcription start site region 48195	708 bp upstream
Tssr48196	transcription start site region 48196	747 bp upstream
Tssr48197	transcription start site region 48197	1789 bp upstream