GTATGAGGGC ACTGGGGGGC GGGGGGCGCG GGGGAGAACC GGGGTGGGTC CCTGACGCCG ACAGTGCTAG TACGGCTGCT CTCTGGGACC TCCAGTTTAT TCTTTAAGGA AGATCTCAGG AATTGAGCCA CTGAACACTG AAGCCCCAGT CCCACAAAGT AAGGCTTCTA GGAAATACCC CAGACACTCG CTGAGACAGA S TTCTGGGAAG GGGCTCACAG CCCACCCCAA ACTGAGGGGG TTAGCCCTCT GCCGTCAGCC CAGGCTGCTG GGACAGGGAA GTCCAGCCCA TAGGCAAGCC CTGGCTGCAG CTATGGGGTC TGAGGGCAGA TGCACACCTG GGGGTCCTGG TCCTCTCTTT TACTCCTTAT CTGTGTGTGA TCTCCGCCCT GGGCTACCCC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47283030 | NES11384364 | PERLEGEN | MM_PANEL2 | f | SNP | C | G | C | C | C | C | C | C | C | C | C | C | C | C |
ss138689915 | ENSMUSSNP5012943 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | |||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33312450 | SNP | C | G | C | C | C | C | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47283030 | NES11384364 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr12:110341017 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi5113 | CpG island 5113 | 764 bp distal | ||||||
Rr472872 | regulatory region 472872 | 556 bp distal | ||||||
Rr472873 | regulatory region 472873 | 983 bp distal | ||||||
Rr472874 | regulatory region 472874 | 421 bp proximal | ||||||
Rr472875 | regulatory region 472875 | 1881 bp proximal | ||||||
Tssr115196 | transcription start site region 115196 | 930 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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