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rs33312450 SNP Detail
Summary
  • ID
    rs33312450
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr12:110341017 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTATGAGGGC ACTGGGGGGC
    GGGGGGCGCG GGGGAGAACC GGGGTGGGTC CCTGACGCCG ACAGTGCTAG TACGGCTGCT
    CTCTGGGACC TCCAGTTTAT TCTTTAAGGA AGATCTCAGG AATTGAGCCA CTGAACACTG
    AAGCCCCAGT CCCACAAAGT AAGGCTTCTA GGAAATACCC CAGACACTCG CTGAGACAGA
    S
    TTCTGGGAAG GGGCTCACAG CCCACCCCAA ACTGAGGGGG TTAGCCCTCT GCCGTCAGCC
    CAGGCTGCTG GGACAGGGAA GTCCAGCCCA TAGGCAAGCC CTGGCTGCAG CTATGGGGTC
    TGAGGGCAGA TGCACACCTG GGGGTCCTGG TCCTCTCTTT TACTCCTTAT CTGTGTGTGA
    TCTCCGCCCT GGGCTACCCC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47283030 NES11384364 PERLEGEN MM_PANEL2 f SNP C G C C C C C C C C C C C C
ss138689915 ENSMUSSNP5012943 ENSEMBL ENSEMBL_Sanger f SNP G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33312450 SNP C G C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47283030 NES11384364 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:110341017 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5113 CpG island 5113 764 bp distal
Rr472872 regulatory region 472872 556 bp distal
Rr472873 regulatory region 472873 983 bp distal
Rr472874 regulatory region 472874 421 bp proximal
Rr472875 regulatory region 472875 1881 bp proximal
Tssr115196 transcription start site region 115196 930 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory