rs33313956 SNP Detail

Summary

• ID
  rs33313956
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144369652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTTGAGA CAACGGAAGG GAGTCGCTGT GGCGACCCTG
  CCGAGCAAGG CGGAGCAGGC ACAGCACGGG CGCCCCAAGC CGATCCGATG AAGAAGGCCC
  M
  GCGCGACCGG ATGAAGAAGG TCCCTCGCCT CTCTCTCAAG CCTCGGTCCC CGGCGCGCGC
  CTCCACCGGT TCCCGAGACT TCCAGCGCGC TCCGAGGGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45262879	mCV22517536	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss147798103	ENSMUSSNP5353325	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33313956					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144369652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	within coordinates
Dzank1	double zinc ribbon and ankyrin repeat domains 1	318 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	13 bp upstream
Rr566471	regulatory region 566471	1581 bp distal
Rr566472	regulatory region 566472	345 bp distal
Rr566473	regulatory region 566473	within coordinates
Rr566474	regulatory region 566474	27 bp proximal
Tssr20540	transcription start site region 20540	205 bp downstream
Tssr20541	transcription start site region 20541	6 bp upstream
Tssr20542	transcription start site region 20542	59 bp upstream
Tssr26607	transcription start site region 26607	308 bp upstream
Tssr26608	transcription start site region 26608	300 bp upstream
Tssr26609	transcription start site region 26609	282 bp upstream
Tssr26610	transcription start site region 26610	220 bp upstream
Tssr26611	transcription start site region 26611	195 bp upstream