rs33314169 SNP Detail

Summary

• ID
  rs33314169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGATTCAGA TAAACTACAG TTCACACACC TGTGAGCATA
  TTAGAGATGT TTCCAATGTT ACTTATGAAA GAGACATTTA TGTCGATGGG GAGAGGAAAC
  R
  AGATGTTTAA GCCTGTCTGC GAGGTAAACT TAATGAACAC AAAACAAGCC CCAGCGTGGG
  AAGGGAGGCG ACACTTGAGC ACCCACTGTG TGGCCAGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47283051	NES11384285	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G	A	A		A	G	A	A		A
ss324157759	CHEV_12_111614129	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33314169					SNP	A	A	G	A	A	A	A	G	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283051	NES11384285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342353 () rs orientation: forward

Symbol	Name	Function Class
Rr472872	regulatory region 472872	1892 bp distal
Rr472874	regulatory region 472874	397 bp distal
Rr472875	regulatory region 472875	545 bp proximal
Rr472876	regulatory region 472876	828 bp proximal
Rr472877	regulatory region 472877	1875 bp proximal
Rr472878	regulatory region 472878	1939 bp proximal
Tssr115196	transcription start site region 115196	402 bp downstream