rs33314172 SNP Detail

Summary

• ID
  rs33314172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTCCC TGCATAAAGA
  CATCAGCCGT ACCATTTATT AGGAGAAAAA TTGAAAACAG ACTAAAAGCA CAGTAATGGA
  AGATTCAGAT AAACTACAGT TCACACACCT GTGAGCATAT TAGAGATGTT TCCAATGTTA
  CTTATGAAAG AGACATTTAT GTCGATGGGG AGAGGAAACA AGATGTTTAA GCCTGTCTGC
  S
  AGGTAAACTT AATGAACACA AAACAAGCCC CAGCGTGGGA AGGGAGGCGA CACTTGAGCA
  CCCACTGTGT GGCCAGCCCA TCCAGGGTCT TAGGGTCCAA GTCATCTCTA CCTCTTGTGC
  TTTAAAAACA ATTAATATGC ATTGTTACTT TTCAAAGAAA AGGGGTGTGT GTGGGTGTGG
  GGGGGGGTGT TAAGCTAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47283054	NES11384286	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33314172					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283054	NES11384286	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342374 () rs orientation: forward

Symbol	Name	Function Class
Rr472872	regulatory region 472872	1913 bp distal
Rr472874	regulatory region 472874	418 bp distal
Rr472875	regulatory region 472875	524 bp proximal
Rr472876	regulatory region 472876	807 bp proximal
Rr472877	regulatory region 472877	1854 bp proximal
Rr472878	regulatory region 472878	1918 bp proximal
Rr472879	regulatory region 472879	1998 bp proximal
Tssr115196	transcription start site region 115196	423 bp downstream