rs33314896 SNP Detail

Summary

• ID
  rs33314896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121393917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGTGGG TCACCGTAGG
  ATGTGCAGGG CATTTCAGAG CACAAGACCA CAGCTCAAGT CCCAGTCCTG CTGCTGCCAG
  ATAAGCCTCA GTGTGACAGC AACTGTAAGG TGCGATGGGT GACATCATAC AAGACAATGT
  GTGGCGATGA CACTAACCTC AGTAAGCTGA TATGCACAGC CAGTGAGAAT GCCAAGAGCA
  Y
  TGTAATGCTG GTGGGATTTT AAAATAGTGC AGTCACTTTG GGAAATAGTT GGGAATTTTT
  TCCCAAAAGG TTACAGACTC AACAATTCCA CTTTTACGGA TATGCCCAAG AGAATTTTAA
  TGTGTCTATA GGTGCATGAA TGTTAATACT TCAACTATTT AGGGTACCCA AACAATGTGA
  GCAATCCAGT CCAGCTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45263343	mCV23863877	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss147391235	ENSMUSSNP2371209	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33314896					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121393917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563849	regulatory region 563849			within coordinates