rs33314920 SNP Detail

Summary

• ID
  rs33314920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4265626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAATAT TTTTGTGTAT
  GTGTGTGCAC ATGTGTATAC AGTTGTACTC ACCCATCGCC CCCCATTGCC TGTGCATGTG
  GAGGCCAGAG ATAAACACCA ACATTTAGCT GGACCCATTT TTCTGCCTTG TTTTATTTTC
  TGTTTTGCTT ATTATTACTA TGTGGACTGT GTAGGCTGGC CTTGAACTTA CAGAGATCCA
  Y
  ATGCCTCTGG CTTCTAAGAG CTGGGATTAA CAGCAAGTGC TACTACACTT GGCTATTTTT
  TGGGGGACAG GATCTCTCAC AGAAACTGAT GTTTGACACT TCCTCTGCTG AGCACCAGAA
  ACACACCTCT TTTCTTCCCA CCCAGAGCTG AGGTTACAGT GATACATCAA GATCAGCTTT
  TACATAGGTG CTGAAGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46261106	mCV23159898	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148555632	ENSMUSSNP2210365	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33314920					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4265626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20044	CpG island 20044	1398 bp distal
Cpgi20045	CpG island 20045	671 bp distal
Cpgi20046	CpG island 20046	729 bp proximal
Gm64374	predicted gene, 64374	88 bp downstream
Prr36	proline rich 36	within coordinates
Rr658992	regulatory region 658992	1758 bp distal
Rr658993	regulatory region 658993	1676 bp proximal
Tssr80244	transcription start site region 80244	1876 bp upstream
Tssr80245	transcription start site region 80245	1530 bp upstream
Tssr80246	transcription start site region 80246	1498 bp upstream
Tssr80247	transcription start site region 80247	1323 bp upstream
Tssr80248	transcription start site region 80248	1269 bp upstream
Tssr80249	transcription start site region 80249	1246 bp upstream
Tssr80250	transcription start site region 80250	1141 bp upstream
Tssr80251	transcription start site region 80251	1043 bp upstream
Tssr80252	transcription start site region 80252	1002 bp upstream
Tssr80253	transcription start site region 80253	896 bp upstream
Tssr80254	transcription start site region 80254	836 bp upstream
Tssr80255	transcription start site region 80255	379 bp downstream
Tssr80256	transcription start site region 80256	1353 bp downstream
Tssr80257	transcription start site region 80257	1392 bp downstream
Tssr80258	transcription start site region 80258	1487 bp downstream
Tssr80259	transcription start site region 80259	1507 bp downstream
Tssr80260	transcription start site region 80260	1553 bp downstream
Tssr80261	transcription start site region 80261	1635 bp downstream
Tssr80262	transcription start site region 80262	1840 bp downstream