rs33315025 SNP Detail

Summary

• ID
  rs33315025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTGCAT AAAGACATCA
  GCCGTACCAT TTATTAGGAG AAAAATTGAA AACAGACTAA AAGCACAGTA ATGGAAGATT
  CAGATAAACT ACAGTTCACA CACCTGTGAG CATATTAGAG ATGTTTCCAA TGTTACTTAT
  GAAAGAGACA TTTATGTCGA TGGGGAGAGG AAACAAGATG TTTAAGCCTG TCTGCGAGGT
  R
  AACTTAATGA ACACAAAACA AGCCCCAGCG TGGGAAGGGA GGCGACACTT GAGCACCCAC
  TGTGTGGCCA GCCCATCCAG GGTCTTAGGG TCCAAGTCAT CTCTACCTCT TGTGCTTTAA
  AAACAATTAA TATGCATTGT TACTTTTCAA AGAAAAGGGG TGTGTGTGGG TGTGGGGGGG
  GGTGTTAAGC TAGGGTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47283057	NES11384287	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33315025					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283057	NES11384287	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342379 () rs orientation: forward

Symbol	Name	Function Class
Rr472872	regulatory region 472872	1918 bp distal
Rr472874	regulatory region 472874	423 bp distal
Rr472875	regulatory region 472875	519 bp proximal
Rr472876	regulatory region 472876	802 bp proximal
Rr472877	regulatory region 472877	1849 bp proximal
Rr472878	regulatory region 472878	1913 bp proximal
Rr472879	regulatory region 472879	1993 bp proximal
Tssr115196	transcription start site region 115196	428 bp downstream