rs33315966 SNP Detail

Summary

• ID
  rs33315966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGGTGCT GCTCAGGAGG TGGGGTTGGG GAGCTGCTTG
  CTGTGTGCAT GGTGGCTCAC TGCAGAACAG GACAGCTATA AAGACAACAC GGTACAGTGG
  Y
  GTGTGCCATC CTTAGACTGC ACATGCTTGC ACCATTTAGG TTTCTAGACC AAAAACACTG
  TCCTGTGGTT GCCCTGGTCT AAACCATAGC TAGCGTGGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47283069	NES11384291	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33315966					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283069	NES11384291	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342859 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	903 bp distal
Rr472875	regulatory region 472875	39 bp proximal
Rr472876	regulatory region 472876	322 bp proximal
Rr472877	regulatory region 472877	1369 bp proximal
Rr472878	regulatory region 472878	1433 bp proximal
Rr472879	regulatory region 472879	1513 bp proximal
Tssr115196	transcription start site region 115196	908 bp downstream