rs33316555 SNP Detail

Summary

• ID
  rs33316555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110340034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTTTA AATTAAACAT
  TAAACCGCTA ACAAATTAAA TGTAAATTAT TAGGCCCGCG GATGATGGAG AGGCTCCCCG
  GGGAGGGGGC AGCTCGCTGG CTGCGCAGAA GCACGCCGCA TGTCCCGGGA CACAGCCGCA
  GGGCCGGGGT GAAGCGAGGA CAAGACGGCT TGTGGGCTCA GCCTGCCCCC TGCTGGTTAT
  Y
  AGCAGGAACG CAGCAGTCGC AAGCACCCCA TCCGCCCAGC GCCAGACTCC TCTGGATCCT
  TCTAGAAGCA GCTACGCCAC GGGCTGTCAG GCGCCTGCGC TCTTGTCCCG CATGAATTTT
  TGCTGCGCAG ACCTAGTTGG GGAGGGCTAT CTGGCTTGGA AATGCGTGCG CCCTTGAAAG
  AAAACCGCCT CCTCTGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47283018	NES11384534	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33316555					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47283018	NES11384534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110340034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5113	CpG island 5113	within coordinates
Rr472872	regulatory region 472872	within coordinates
Rr472873	regulatory region 472873	within coordinates
Rr472874	regulatory region 472874	1404 bp proximal
Tssr115196	transcription start site region 115196	1913 bp upstream