rs33316650 SNP Detail

Summary

• ID
  rs33316650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34418535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCCATTT AAACAGTTCC CACTTTACCA GTGGATAGTT
  CACGCAGGTC TGAGTTGGGT AGATGGATAC TCTTCTTTAA TGTTTGGTTT CACTCTCTGT
  R
  TTTAAGTTTG CACAAGCGTC CCAATACTCT CACCATACTA ACTGCTTTAG AGTCAGTTCG
  GGTTGTGTAC GTCCCCTTTA TTAGGATGTA AATTACCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46261328	mCV24724687	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss149088244	ENSMUSSNP2326228	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss322573965	CHEV_8_35038979	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33316650					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34418535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530006C21Rik	RIKEN cDNA 9530006C21 gene			within coordinates
Cpgi20240	CpG island 20240			596 bp proximal
Rbpms	RNA binding protein gene with multiple splicing			Intron
				Noncoding-Transcript-Variant
Rr661901	regulatory region 661901			692 bp distal
Rr661902	regulatory region 661902			within coordinates
Rr661903	regulatory region 661903			1288 bp proximal
Tssr80880	transcription start site region 80880			1033 bp upstream
Tssr80881	transcription start site region 80881			1291 bp downstream
Tssr80882	transcription start site region 80882			1426 bp downstream
Tssr80883	transcription start site region 80883			1471 bp downstream