rs33317848 SNP Detail

Summary

• ID
  rs33317848
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151925201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACTAAG AGTGAGTCTA
  ACTGGGCACC CTGCCGCACT GCCACTGAAG TAGCAGACAG GAACCCAGGC GGATGGGGGG
  CATTTCCTAG GGGACTTCCA ATCACTCAGC CACATGACAG CATCCTGCCA AGCCAGGTAA
  AGAGAAGATG CTCAACAAAT GGCTCTGTGA CCTCATCAAG GTCAAAGAAG TTAGACAGTG
  W
  TCAAGGATGC TTCTTAGAGC CCCTCAGCTC CTGGCACCAC TTAGCTACCT ACAGAACACA
  CACACACGGG CGCGCACACA CACACACACA CACACACACA CACACACACC AATTGCTCTG
  CCTACATCTC CCACTCTGCT ATCCTGTTTT CTTGACCTCC GGGACCTTGG GGGTCGGGGG
  AAGAGGCAGA AGCCCAGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45263554	mCV24885032	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss147961590	ENSMUSSNP5368946	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			T
ss320562097	CHEV_2_151909017	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33317848					SNP	A	A	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151925201 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	1839 bp upstream
Cpgi12435	CpG island 12435	610 bp distal
Gm75114	predicted gene, 75114	1788 bp downstream
Rr567275	regulatory region 567275	1834 bp distal
Rr567276	regulatory region 567276	1742 bp distal
Rr567277	regulatory region 567277	within coordinates
Rr567278	regulatory region 567278	931 bp proximal
Scrt2	scratch family zinc finger 2	within coordinates
Tssr20757	transcription start site region 20757	1891 bp downstream
Tssr20758	transcription start site region 20758	1657 bp downstream
Tssr20759	transcription start site region 20759	1638 bp downstream
Tssr20760	transcription start site region 20760	1456 bp downstream
Tssr20761	transcription start site region 20761	1388 bp downstream