rs33319071 SNP Detail

Summary

• ID
  rs33319071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93019836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTCAAC TCACAGCCTG
  GACTTGTGAC AGCCCCCTCT GCTGGAGACA GAGGCTGCCG GCTAGGGGCA GGGTCTTCAC
  GAATTATTCT TGGCTTTTCT GTGTGTTCAC TTACTGCTCC AAGTATCAGT GAGTGAGCCA
  CAGAAGAGTG ATGTCGCAGT GGCCAGCACG GGTCCCACAG GTCCCTGCAC ACCTGTGGAA
  R
  CTGTCAAGAC TCTAGATAGT GCTGTGTCTT AAGCAAGATC AGATAAATAA ATAATACATA
  AGTCGATTGG GCCACATGCC GTGCCTTGGC GTTTTTTCTC AATACCCAGA AGGCTGAGGC
  AGGAAGAGTC TGAATTACAG ACCAGTTTGG ACTATTTAGG AAGACCCCGT CTCAGAAAGA
  AAGCCAGAGT CAGGGGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45263794	mCV23016596	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss146939787	ENSMUSSNP1969145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33319071					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93019836 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230071H18Rik	RIKEN cDNA C230071H18 gene			1416 bp upstream
Cpgi11943	CpG island 11943			497 bp distal
Rr561109	regulatory region 561109			1897 bp distal
Rr561111	regulatory region 561111			within coordinates
Rr561112	regulatory region 561112			504 bp distal
Rr561113	regulatory region 561113			288 bp distal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr18979	transcription start site region 18979			1938 bp downstream
Tssr18980	transcription start site region 18980			1921 bp downstream
Tssr18981	transcription start site region 18981			1850 bp downstream
Tssr18982	transcription start site region 18982			1708 bp downstream
Tssr18983	transcription start site region 18983			1620 bp upstream