rs33319352 SNP Detail

Summary

• ID
  rs33319352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3426845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTTCTC CAAGAAGTAT
  TTCCTATTTT GAGTTTTTGT CACAATGAGC TAACTTTGGA TATTCTTGAA TTTTAATATA
  AACAGGTGGC TTAATATGGT GGTCTAATCA CAACATGGAG GAATCAGGAG GATTTGTGAG
  TTCAAGGCCA GCTTGAGTTA CATAGTGAGA ACTTGTCTTA AACAAATGAA AATAAATAAA
  Y
  AGGATCATAT ACTGGATAGA TTAAGACATC TTCAATATTT TTCAAAGGTT TATTTATTTT
  TTTATTTTAC ATGTATGCTT GTTTACCTGT GTGTAGCTGT CCTATGAGTG CTAGGAATTA
  AACCTTGGCC TTCTGGAAGA GCAGCCATCT TAACTACTTG AGCTATTTCT CCAGCCCTGT
  CTAGCTCTTA CTATTGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45264294	mCV23104887	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146261816	ENSMUSSNP5735371	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320204513	CHEV_2_3343080	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33319352					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3426845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1394 bp distal
Dclre1c	DNA cross-link repair 1C	within coordinates
Rr367090	regulatory region 367090	1653 bp downstream
Rr550902	regulatory region 550902	1633 bp distal
Rr550903	regulatory region 550903	1340 bp distal
Tssr15890	transcription start site region 15890	1601 bp downstream
Tssr22367	transcription start site region 22367	1784 bp upstream