rs33320216 SNP Detail

Summary

• ID
  rs33320216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC CATGTCAGTG CTGGGGATTG
  R
  ACCTGGGTCC TCACACCTTT TACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45264175	mCV22515623	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss147245662	ENSMUSSNP4729637	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320462289	CHEV_2_113871347	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33320216					SNP	A	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876092 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1671 bp downstream
Rr562815	regulatory region 562815	within coordinates
Rr562816	regulatory region 562816	594 bp proximal
Tssr600	transcription start site region 600	1951 bp downstream
Tssr601	transcription start site region 601	1961 bp downstream
Tssr19429	transcription start site region 19429	1673 bp upstream
Tssr19430	transcription start site region 19430	1768 bp upstream
Tssr19431	transcription start site region 19431	1848 bp upstream
Tssr19432	transcription start site region 19432	1944 bp upstream
Tssr25660	transcription start site region 25660	1700 bp downstream
Tssr25661	transcription start site region 25661	1717 bp downstream
Tssr25662	transcription start site region 25662	1774 bp downstream
Tssr25663	transcription start site region 25663	1837 bp downstream
Tssr25664	transcription start site region 25664	1867 bp downstream
Tssr25665	transcription start site region 25665	1975 bp downstream