rs33320811 SNP Detail

Summary

• ID
  rs33320811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:96287488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATCTCAC GCATGGCAAG
  AAGGCCGAGG CTTAGCCTAC TTACCAGTCA GTCCCCTTGA CTGGAAGAGT CAGGAAAACT
  GGCCAGTTAC CACTGAGGCA AGCAGCCCAG TTCTAATGTG ATGCGGAGAT GAGCTAGTAC
  CGGTGAGAAG TTCAGCTCTG CTGCCAGGCA TGCAGTATGC AGCCAGTAAA GAATGAGCTA
  Y
  GATCATTAAC TACGTAAGGG GTTGTAGGGG CTGTAATTTT TCGGTAGGGA GTTGTGGAAA
  TGGGGAAACA TCTCAAGATA ACTACCAGGT TTCATTTATC CCACCTGTCC TACCTGAGGA
  CACTTCTGCA AGTGTCAAAT CTCTGCTCCC ACCCCATGGT CCATCTTGGT CCGACATAAA
  GGAAGGACTA TGCACCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss46261606	mCV23402357	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		T
ss60650945	NES16266194	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T		T		T	T	C	T
ss145644682	ENSMUSSNP4925735	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs33320811					SNP	T	T	C	C	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60650945	NES16266194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96287488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc113	coiled-coil domain containing 113			1970 bp downstream
Prss54	serine protease 54			Intron
				Noncoding-Transcript-Variant