rs33321884 SNP Detail

Summary

• ID
  rs33321884
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73142981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCGTGGT GGCACACGCC
  TTTAAGCCCA GCACTTGGGA GGCAGAGGCA GGCGAATTTC TGAGTTCGAG GCCAGCCTGG
  TCTACAGAGT GAGTTCCAGG CTGTCCAGAA ACCCTGTTTC GAAAAACAAA GAGATAGAGA
  CAGAAACAGA GAGAGGGAAG AGAAGAGAAA ACTTGGAAAG TTTGTAAATA GAACCAAGCA
  M
  GCTGAAAAAA ACCTTGTTTA CAATGAATTC CTATATACCG AGACACAAAG AGTTCGGGAT
  TTGTTTAAGG CAATTCGTGT AAGCCAAGAG AAAGTGGCCT GATGGGATGG TAAAACGGGC
  ATTTCAACCT AGGTAGCCCT TTAACCTCAA TACCAGCGTT GACTAGAAAA CAGCCTCTTG
  TTTTCGCTTC TTCTAGGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39522320	mCV23494924	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss145925125	ENSMUSSNP1634425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33321884					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73142981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	131 bp proximal
Rr335920	regulatory region 335920	981 bp distal
Rr340175	regulatory region 340175	within coordinates
Rr405431	regulatory region 405431	269 bp upstream
Tssr5197	transcription start site region 5197	158 bp downstream
Tssr145775	transcription start site region 145775	670 bp upstream
Tssr145776	transcription start site region 145776	692 bp upstream
Tssr145777	transcription start site region 145777	738 bp upstream
Tssr145778	transcription start site region 145778	1567 bp upstream
Tssr145779	transcription start site region 145779	1638 bp upstream
Tssr149306	transcription start site region 149306	1483 bp downstream
Ypel5	yippee like 5	642 bp upstream