rs33322820 SNP Detail

Summary

• ID
  rs33322820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAACTAAT GGTGGCACAC ACCTGTAATC TCAGCACATG
  GGAGGCAGAG GCAGAAGGTT ATCCTCAACT ATAAAGCAAG TTTGAGGCCA GCCCAGGATA
  Y
  ATGAGACCCT GCTTCAAAAA ACAAATTAAA AAAAAGGAGG AGGAAGAGGA GGAGGAGAGG
  ACGATGACAA AAAACCCTCA TCACTGGGAA GATATAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39521481	mCV24098860	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss145493375	ENSMUSSNP3727319	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss325366948	CHEV_17_33776412	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33322820					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858441 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	26 bp upstream
Tssr143785	transcription start site region 143785	1655 bp downstream
Tssr143786	transcription start site region 143786	1637 bp downstream
Tssr143787	transcription start site region 143787	1357 bp downstream
Tssr143788	transcription start site region 143788	1344 bp downstream
Tssr143789	transcription start site region 143789	1326 bp downstream
Tssr143790	transcription start site region 143790	1732 bp upstream
Tssr147440	transcription start site region 147440	444 bp downstream