GAGAT GGGGATTTAT AGGTTAGGGG R TTCACCTTCT GCTCCAGCTG GGTCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46261830 | mCV22781952 | ABI | CRAMUS_MOUSE | f | SNP | A | G | G | A | |||||||||||||
ss60632857 | NES16283406 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | A | G | A | A | A | A | G | G | A | G | A | ||||
ss145126557 | ENSMUSSNP6742222 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | |||||||||||||||
ss322700308 | CHEV_8_73009930 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs33323134 | SNP | A | G | A | A | G | A | G | A | A | A | A | G | G | A | G | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60632857 | NES16283406 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr8:70938681 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi20459 | CpG island 20459 | 1039 bp proximal | ||||||
Gm64830 | predicted gene, 64830 | 1361 bp downstream | ||||||
Rr186749 | regulatory region 186749 | 319 bp proximal | ||||||
Tmem59l | transmembrane protein 59-like | within coordinates | ||||||
Tssr81616 | transcription start site region 81616 | 291 bp upstream | ||||||
Tssr81617 | transcription start site region 81617 | 1183 bp downstream | ||||||
Tssr81618 | transcription start site region 81618 | 1283 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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