rs33323220 SNP Detail

Summary

• ID
  rs33323220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90353568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT TTGAAGACAT GAAAAATTAC
  K
  GTTCCATGCT CACAGGCAAT CACCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45264537	mCV25136613	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
ss146919968	ENSMUSSNP1156133	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
ss320390849	CHEV_2_90363381	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33323220					SNP	G	G	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90353568 () rs orientation: forward

Symbol	Name	Function Class
2310079F09Rik	RIKEN cDNA 2310079F09 gene	796 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560519	regulatory region 560519	322 bp distal
Tssr25101	transcription start site region 25101	107 bp upstream
Tssr25102	transcription start site region 25102	1808 bp downstream