rs33323491 SNP Detail

Summary

• ID
  rs33323491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCCATGG TGTGACATAA TGCTGCATGT GAAATACACG
  CATGTACTCA AAACCAGTGT TGCAGTGAAG TCATGTGATA CAACACAGGC AATAACCATC
  R
  CAAACACCTT GTATTAATTT TACATTTGAT TTGGAATTCA ATTTTGGTCA TAGTGAATTC
  ATGAGCCATA TAATGTTTTT TGTTTTGTTT TGTTTAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45264742	mCV22515896	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss147245724	ENSMUSSNP2430585	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A		G
ss320462292	CHEV_2_113872175	CHEVERUD	SCREENING_POP	f	SNP					G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33323491					SNP	G	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876920 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	843 bp downstream
Rr562815	regulatory region 562815	729 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	1123 bp downstream
Tssr601	transcription start site region 601	1133 bp downstream
Tssr19429	transcription start site region 19429	845 bp upstream
Tssr19430	transcription start site region 19430	940 bp upstream
Tssr19431	transcription start site region 19431	1020 bp upstream
Tssr19432	transcription start site region 19432	1116 bp upstream
Tssr19433	transcription start site region 19433	1682 bp upstream
Tssr19434	transcription start site region 19434	1735 bp upstream
Tssr25660	transcription start site region 25660	872 bp downstream
Tssr25661	transcription start site region 25661	889 bp downstream
Tssr25662	transcription start site region 25662	946 bp downstream
Tssr25663	transcription start site region 25663	1009 bp downstream
Tssr25664	transcription start site region 25664	1039 bp downstream
Tssr25665	transcription start site region 25665	1147 bp downstream
Tssr25666	transcription start site region 25666	1714 bp downstream
Tssr25667	transcription start site region 25667	1741 bp downstream
Tssr25668	transcription start site region 25668	1777 bp downstream
Tssr25669	transcription start site region 25669	1806 bp downstream