rs33323565 SNP Detail

Summary

• ID
  rs33323565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114271478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGCAA ATATAGAGGC
  AAATATAGAG GCAAATATAA AAAAAGATAT AAATATATTT TTGAGGACAG CTTGGTCTAC
  AGAGTTAAGT TCCAGGACCA GACAGAGAAA AACCCTCTCT CAAAAAAGTA TAGGGTCTCA
  AACAAACAAA ACCCCAACCA ACAACAAAAC TCTTCAGTTT AGTTTGTTTG TTTGTTCTGG
  K
  TTTTTTTTGT TGTTGTTGTT TTGTTTTTTT CCCTTTGGCA GTGCTGGGAG GGTCAAATTC
  ATGGTCTTGG TTGCTGTGTT TCGCCATTGA GCCACACATG GGTAGTCTTG GGGTTTTAAT
  GCCCCACCCT CACCCCACAA GTACCTGGAA TTGTAGCCTG AGCAGGCAGC CCTGGTTCAT
  GTCACACAGT ACAGGCAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45764679	mCV24685767	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss149107143	ENSMUSSNP2235241	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33323565					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114271478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	1563 bp distal
Gm73235	predicted gene, 73235	within coordinates
Tssr48060	transcription start site region 48060	1188 bp downstream
Tssr52696	transcription start site region 52696	1820 bp upstream
Ung	uracil DNA glycosylase	within coordinates