rs33323575 SNP Detail

Summary

• ID
  rs33323575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30225813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGGAA GGTTTCAAGT
  GTATCCTTTC AAAAAATTCT TCAGAGGAGG ATAGGGATCT AGGACAAGTT GTAGCCTTAG
  CAGAAATTCC AAAGATGTAA CAGTGTTTTA GCCGTAGAGT CTTCTTTGAA TTTTAATTTG
  ATTTAAAACA TTTTAAAAGT TTATTTTGAA CTTTATTATG AAAAAAAAAG TTGGAAAAAA
  M
  CCACACATCA AAATTAACCA GCTCCAAAGA CTTTACAGTG AGAGTTGTTG GAGTTATTGG
  CTTGTCTGTG AAGTGCTGAA GTGTTGGATG GATAGTCCAA TTCTCCTAGG GATCTGACAG
  GGTTAGCTAG TACTGGATGG GAGGCATGCA GATGATGGGA TGGCTAACTT GCTCCTCCTT
  GTAGGGAGTG CAGGGTGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39521858	mCV24979312	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33323575					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30225813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	1056 bp distal
Tssr143602	transcription start site region 143602	1993 bp downstream
Tssr143603	transcription start site region 143603	1963 bp downstream
Tssr143604	transcription start site region 143604	1741 bp downstream
Tssr143605	transcription start site region 143605	1046 bp downstream
Tssr143606	transcription start site region 143606	934 bp downstream
Tssr143607	transcription start site region 143607	816 bp upstream
Tssr147243	transcription start site region 147243	1199 bp upstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates