rs33323631 SNP Detail

Summary

• ID
  rs33323631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29267904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG TGGGGCTCAG AAGAGCTTTC
  Y
  GGGAGGACGG GGATCATTAG ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39521596	mCV27559860	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss60559275	NES16575640	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C	C		C	T		C
ss145426153	ENSMUSSNP1746499	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss325352781	CHEV_17_29185875	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33323631					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559275	NES16575640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29267904 () rs orientation: forward

Symbol	Name	Function Class
Rr524771	regulatory region 524771	1768 bp distal
Rr524772	regulatory region 524772	1831 bp distal
Rr524773	regulatory region 524773	492 bp distal
Rr524774	regulatory region 524774	733 bp distal
Rr524775	regulatory region 524775	310 bp distal
Rr524776	regulatory region 524776	408 bp proximal
Rr524777	regulatory region 524777	587 bp proximal
Tssr143492	transcription start site region 143492	1712 bp downstream