rs33325042 SNP Detail

Summary

• ID
  rs33325042
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133978297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAATTCA GTGTGCATGC
  TTATTATCAT TTTACTCATT AATTATTTCA TATATTTAAT CTGTTGAACA AAAATATAAA
  TCATTGCTTC CTAGGGAAAC CCTCTTTACT TCCAAATTGT GATAGTTGTT ACACGAGCTC
  TTTCTTCTTC TTGGGGAGAT GCTTGTTCGA TGTCAAGGAC CTTCCAAGTT TCAGCCTCAG
  W
  TGTATGTGAG TAATTTTAAG GCTGACCATT TGGCACTGAA CAACCAATTG GTAAACTCTT
  CCCTGGGGAA GGCTACCTCA CCCACTTCCA GCTTTCCTAG TTGCTTATAG TTCTCTGTGT
  AGGGGTGAGG TCTTAGAGGC TTTTATCTGT TCAGTTTATC ATATTATTTG TTATCATCTT
  TATTCAGCTC ATATTTGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45264758	mCV22314625	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss147630464	ENSMUSSNP2515429	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss320512712	CHEV_2_133962113	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33325042					SNP	A	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133978297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	1221 bp proximal