rs33325158 SNP Detail

Summary

• ID
  rs33325158
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7553685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATATTT CCTGAATTAT
  GTATCAGAAT AACTCCATAG TACATGAGAA CATATTTTCT ACATAAGCGG AGGCATGAAA
  TTTTCAAATT GTTTAGGCAA ATGACTGTAC ATTTGTGTTC ACCATTTCTC CTTTTAAAAG
  TTTTGAAAAT AAAAATAGAA TGTTCACATT ATGAAATCCC TCTGAATGTC TACATTTAGG
  W
  TTTAAAACAA TATAAACACT GGAGGCAAAC ATTAGTTTGG CTTGCAAACA CTTCTTTCCT
  CTTCATATTA TACTAAAAAC ATATTAGGGA ACGATGATTC CCAAAAGAAA ACAACTCTAT
  CCAAAAGACC CCATCGCTCT GGGTGTGGTG GTACACACCT GTAGTTCCAG TAACAAGTAG
  GCTGAGTTAG GAGAATACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47784380	NES11704580	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	A	A	T	T	T		A	T	T	A		A
ss132951811	ENSMUSSNP3270806	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss321734087	CHEV_6_7503685	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33325158					SNP	A	T	T	A	T	A	A	T	T	T	T	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784380	NES11704580	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7553685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	1110 bp proximal
Rr146475	regulatory region 146475	1115 bp proximal
Tac1	tachykinin 1	1376 bp upstream
Tssr54885	transcription start site region 54885	1368 bp upstream