rs33325162 SNP Detail

Summary

• ID
  rs33325162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7554170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACAGAA GGTATCTGTA
  AAACCGTGGT TTGCTAAAGA CTTCTGTCTC TGACAGATCT GCAGCACACA CACACACACA
  CACACACACA CCCTTGGTGA CAAAGGTAAA CATACAGACT TTATAGCCCT CCAACAAGGC
  TTAAGGGGAG AGAGGCACAA TTATTCTCTT GCAACTCCCT CTACCTTCTG TGTGTGACTG
  Y
  GAAGAAGCTT CAGAGGAACG AAAGAGGTCC TCAGATGGCT GGTGGGTACG TTCCACATGC
  TGTTCTACAT GCTACAGCGT CCTTGAATGG CTGGTGGGTA AGTTCTACAT GCTACAGCGT
  CCTCAGATGG CTGGTGGGTA AGTTCTACAT GCTACAGCGT CCTCGGATGG CTGGTGGGTA
  CGTTCCACAT GCTGTTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47784384	NES11704473	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss321734090	CHEV_6_7504170	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33325162					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784384	NES11704473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7554170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	625 bp proximal
Rr146475	regulatory region 146475	630 bp proximal
Tac1	tachykinin 1	891 bp upstream
Tssr54885	transcription start site region 54885	883 bp upstream