rs33325330 SNP Detail

Summary

• ID
  rs33325330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40966007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT TCAAATATTA GAGCTGCTTT
  R
  CGATATATGG ATTTTACAAT TAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46262305	mCV24410276	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss144660314	ENSMUSSNP2459943	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322631355	CHEV_8_41598320	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33325330					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40966007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot7	CCR4-NOT transcription complex, subunit 7			Intron
				Noncoding-Transcript-Variant
Cpgi20281	CpG island 20281			425 bp distal
Rr662586	regulatory region 662586			1673 bp distal
Rr662587	regulatory region 662587			1088 bp distal
Tssr2553	transcription start site region 2553			1737 bp upstream
Tssr2554	transcription start site region 2554			1478 bp downstream
Tssr76955	transcription start site region 76955			1522 bp downstream
Tssr76956	transcription start site region 76956			1179 bp downstream
Tssr76957	transcription start site region 76957			1104 bp downstream
Tssr81047	transcription start site region 81047			1692 bp upstream
Tssr81048	transcription start site region 81048			1669 bp upstream
Tssr81049	transcription start site region 81049			1620 bp upstream
Tssr81050	transcription start site region 81050			1210 bp upstream
Vps37a	vacuolar protein sorting 37A			Intron
				Noncoding-Transcript-Variant