rs33325796 SNP Detail

Summary

• ID
  rs33325796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166553970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAATCAGT CCTCCACTTC TGGCACTGGC TTGGGGACCC
  AAGTAAGGGC AAGGCAGAAA AGCAGCCTGG GGTCCCCTGC TCTTGTACAC GTGGGGAAAC
  Y
  GAGGTCAACA CAGGAAGCAA CGGTGTCCCA AGACACAATA ATGTCTGTCT GGCTCATCTC
  AGAATGCCCC AGTCACACAA CAATGGCTGT CCACAAACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45264558	mCV23102406	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148258349	ENSMUSSNP347070	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33325796					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166553970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	751 bp proximal
Gm57440	predicted gene, 57440	1717 bp upstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	within coordinates
Rr397493	regulatory region 397493	1722 bp upstream
Rr570354	regulatory region 570354	within coordinates
Rr570355	regulatory region 570355	864 bp proximal
Rr570356	regulatory region 570356	1227 bp proximal
Rr570357	regulatory region 570357	1772 bp proximal
Tssr27709	transcription start site region 27709	1682 bp downstream
Tssr27710	transcription start site region 27710	1708 bp downstream