rs33326116 SNP Detail

Summary

• ID
  rs33326116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7554190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCGTGGT TTGCTAAAGA
  CTTCTGTCTC TGACAGATCT GCAGCACACA CACACACACA CACACACACA CCCTTGGTGA
  CAAAGGTAAA CATACAGACT TTATAGCCCT CCAACAAGGC TTAAGGGGAG AGAGGCACAA
  TTATTCTCTT GCAACTCCCT CTACCTTCTG TGTGTGACTG CGAAGAAGCT TCAGAGGAAC
  K
  AAAGAGGTCC TCAGATGGCT GGTGGGTACG TTCCACATGC TGTTCTACAT GCTACAGCGT
  CCTTGAATGG CTGGTGGGTA AGTTCTACAT GCTACAGCGT CCTCAGATGG CTGGTGGGTA
  AGTTCTACAT GCTACAGCGT CCTCGGATGG CTGGTGGGTA CGTTCCACAT GCTGTTCTAC
  ATGCTACAGC AGGCTTCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47784388	NES11704475	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33326116					SNP	T	G	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784388	NES11704475	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7554190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	605 bp proximal
Rr146475	regulatory region 146475	610 bp proximal
Tac1	tachykinin 1	871 bp upstream
Tssr54885	transcription start site region 54885	863 bp upstream