rs33326122 SNP Detail

Summary

• ID
  rs33326122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7554683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTGGCT GATTTAGGGA
  GGGAGGGCTG TTCCAGCCAT GTAACACCTC AGGAACCTTT AAGACACATA CAGGTAGAGC
  TAGAAGGAAA ATCCCCGCTT GCCTCATCCC ACTGAAGTGC TTGCTAGTGT CTTAGTGTCA
  TTTCACAAGG TTTTGTTGCG GAAGTTATTT GGCTGTCCTC AAAGCTCAAG ATTCCCTGAC
  K
  CCTCTAGAGA GAAAAGTTCC CAAAGTCCGA GGCATGAGTC ACTTCACTCA GTTTTGATGA
  GTAATCTCAG GTGTCACTGA ACCTTGTTCG GAAGAAGAGG GGAGGAGGGC GTCAGATTGT
  CAGACGAAGA AAACAGGTCT CTCTGGATTG GATGGCAAGA CCTCGACTTC CCTAAAATTG
  CGTCATTTCG AACACAATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47784394	NES11704478	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33326122					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784394	NES11704478	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7554683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	112 bp proximal
Rr146475	regulatory region 146475	117 bp proximal
Tac1	tachykinin 1	378 bp upstream
Tssr54885	transcription start site region 54885	370 bp upstream