rs33326998 SNP Detail

Summary

• ID
  rs33326998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7555275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTCCGC TCCTGCACCG
  CGGCCAAGGA GAGCAAAGAG CGCCCAGCAA GTGCGCACCT GCGGAGCATC CCCGCGGTCT
  GACCGCAGTG AGTACCACTC TAGCCTGCCA GCCAAGGCTG CCTGGGACCC GTCGTGCCTT
  CGTCGGAGGT GGCGTCCGCC CTGGCTCTGC TCCCACTCCA TTCTCAGACC CGGAGAGAAA
  S
  TGTGCAAATA CCAACGCCTC TCTTTGTCTG CCACCTGCAG AGTCTTCAGG CTTGAGAGTG
  TGGGCCAGTG GGTAGGGGGC TGGGACGCTG AGACTCAAGG AGAGGAGGAT TTGAGGCTCT
  TTGGCGCCTC AGGAGCCTTC TTAAAGGGTT TGGAGAAGTG TTCGACCTGG TGGGCTTTTG
  GTTTTGTTTT TATTTTAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47784400	NES11704481	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	G	C	C	G	G	G		C	G	G	C		C
ss321734092	CHEV_6_7505275	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33326998					SNP	C	G	G	C	G	C	C	G	G	G	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784400	NES11704481	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7555275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	within coordinates
Rr146475	regulatory region 146475	within coordinates
Tac1	tachykinin 1	within coordinates
Tssr54885	transcription start site region 54885	208 bp downstream