rs33327000 SNP Detail

Summary

• ID
  rs33327000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7555430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTGGC TCTGCTCCCA
  CTCCATTCTC AGACCCGGAG AGAAAGTGTG CAAATACCAA CGCCTCTCTT TGTCTGCCAC
  CTGCAGAGTC TTCAGGCTTG AGAGTGTGGG CCAGTGGGTA GGGGGCTGGG ACGCTGAGAC
  TCAAGGAGAG GAGGATTTGA GGCTCTTTGG CGCCTCAGGA GCCTTCTTAA AGGGTTTGGA
  R
  AAGTGTTCGA CCTGGTGGGC TTTTGGTTTT GTTTTTATTT TAATCTTGGT TTAGCGGGAC
  CTGTTCTTTC TTCCTTGTGG CACTGAAATT CAGCTGCTCT AACTCTTGGG TGGCCACAGC
  CTCCTTATGT ATAATGTCTC TTTCCCACCT TCCTCTGTCT CCTACTCTCT TCAGAAATCG
  AACATGAAAA TCCTCGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47784402	NES11704482	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33327000					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784402	NES11704482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7555430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	within coordinates
Rr146475	regulatory region 146475	within coordinates
Tac1	tachykinin 1	within coordinates
Tssr54885	transcription start site region 54885	363 bp downstream