rs33327002 SNP Detail

Summary

• ID
  rs33327002
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7555548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGGGCTG GGACGCTGAG
  ACTCAAGGAG AGGAGGATTT GAGGCTCTTT GGCGCCTCAG GAGCCTTCTT AAAGGGTTTG
  GAGAAGTGTT CGACCTGGTG GGCTTTTGGT TTTGTTTTTA TTTTAATCTT GGTTTAGCGG
  GACCTGTTCT TTCTTCCTTG TGGCACTGAA ATTCAGCTGC TCTAACTCTT GGGTGGCCAC
  M
  GCCTCCTTAT GTATAATGTC TCTTTCCCAC CTTCCTCTGT CTCCTACTCT CTTCAGAAAT
  CGAACATGAA AATCCTCGTG GCCGTGGCGG TCTTTTTTCT CGTTTCCACT CAACTGTTTG
  CAGAGGAAAT CGATGCCAAC GATGATCTAA ATTATTGGTC CGACTGGTCC GACAGTGACC
  AGATCAAGGT GAGTCCCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47784404	NES11704483	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	C	A	C	C	A	A	A		C	A	A		C
ss321734094	CHEV_6_7505548	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33327002					SNP	C	A	A	C	A	C	C	A	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47784404	NES11704483	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7555548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	within coordinates
Rr146475	regulatory region 146475	within coordinates
Tac1	tachykinin 1	within coordinates
Tssr54885	transcription start site region 54885	481 bp downstream