rs33327563 SNP Detail

Summary

• ID
  rs33327563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118755504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GATGCTGAGG TCCCCCCCAC
  Y
  TGCTAGCTAA GTCCAAATCT ATGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45265742	mCV22545742	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147317293	ENSMUSSNP1496595	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320472651	CHEV_2_118750759	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33327563					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118755504 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	495 bp downstream
Chst14	carbohydrate sulfotransferase 14	1474 bp upstream
Cpgi12099	CpG island 12099	1263 bp proximal
Rr563380	regulatory region 563380	983 bp proximal
Tssr19592	transcription start site region 19592	1473 bp upstream
Tssr19593	transcription start site region 19593	1532 bp upstream
Tssr19594	transcription start site region 19594	1553 bp upstream