rs33327969 SNP Detail

Summary

• ID
  rs33327969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143928618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAACTTA AACTGGGGCT
  CCTTTTCAGA CCTGTGCAGA CATGACATTG AGATGACGAC CACTGAAAGA ACAGTTATCC
  CAAGCACACA GGCACGGGTG AGAGTGCAGA ATGGCAATCT CAATTCATAG TCAAAACCAA
  AACTCAAGAG ACCCACGAAC AGAAAATGCA CAAACTAAAA CGGAATGGCA GGGGTGGCAC
  R
  GTGACTCCAA AGAGAAAGCC AAGTAGCACC AAGCCTGATG ACCTGAGTCA GAACCCAGGG
  CCCACATGAT GGAGGGAGAG ACTCGACTCG ACTCTCGCAA ACCATTCTCT GACCTAGACA
  CACACACAAT AAATACATGG AACTAAATGA CTATATAAAG GCTTTGATCT TCAGTGGCTA
  GACACTCAAA TCTAGACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45765465	mCV25192394	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss144605830	ENSMUSSNP445709	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321708909	CHEV_5_144752669	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33327969					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143928618 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Tssr54387	transcription start site region 54387	807 bp downstream
Tssr54388	transcription start site region 54388	831 bp downstream
Tssr54389	transcription start site region 54389	910 bp downstream