rs33328259 SNP Detail

Summary

• ID
  rs33328259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:133576400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCTGAGC TTTGGTGATA
  CCCTGTACCC TTGGGGGCCT TCAGTACAGT ACAAGGGGCT CCCATTGTGC CAGGTAGTTT
  CCCCAGCTGG GGAGTCCCTG CAGTTCCGTA CAACTGGCTC AAGCCAAGGG CTCAGAGGAC
  AGTGACTTTT GCAATTCTTC CAACTTCATA AATGATGGAG GAAGAGACAT GTTTTGGCAA
  Y
  GATATAATGG ACAATGGGAA GACTCTCCAA AGCCACTTTT CATATCATCA CCTTGATTTT
  AACTTCCTGA GATACTTCCT TTATATTTGC TTTTAAACAT TAAATATGAG AAGAAAAAAA
  GAAAAGCTTA TGGCAACATG TCCAAGGAGA ATTGGGGAAA AGTTAACACA TTCTTTCCTT
  TAAGTTGACC TTCCAGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47284786	NES11570354	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss322453642	CHEV_7_141166354	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33328259					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47284786	NES11570354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:133576400 () rs orientation: forward

Symbol	Name	Function Class
5033415L01Rik	RIKEN cDNA 5033415L01 gene	1407 bp downstream
Adam12	ADAM metallopeptidase domain 12	within coordinates