rs33328725 SNP Detail

Summary

• ID
  rs33328725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57413456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT CCAGGTTTTC AGAGAATTGA
  S
  AATTCTCACC CCCAGCTGAC TCTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss39522404	mCV23460362	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss325427560	CHEV_17_57245879	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs33328725					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57413456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	342 bp distal
D17Mit252	DNA segment, Chr 17, Massachusetts Institute of Technology 252	1344 bp proximal
Gm11110	predicted gene 11110	514 bp upstream
Rr529280	regulatory region 529280	1121 bp distal
Rr529281	regulatory region 529281	44 bp distal
Rr529282	regulatory region 529282	1489 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	within coordinates
Tssr145375	transcription start site region 145375	1035 bp downstream
Tssr145376	transcription start site region 145376	176 bp upstream
Tssr148901	transcription start site region 148901	508 bp upstream