rs33330397 SNP Detail

Summary

• ID
  rs33330397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:133577278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTCCAA TGTTTGTGAG
  AAGGCATGGA GGTAAAGCAA GTCCTAACTG GCTAAGTACT TTCTCTCATT TCTTTTTGAG
  ACCAATTGTA CAGAGGAGTT TCACAGGTCC TTACCTCTCT GTTGTCTGCC ACAATAACCA
  GCTCTACGTA CTTGGTCATC TTAAGGGTCT CTCTCTTATG CTGTCAAAAG AAAGTGAGAG
  Y
  TTAGTTTCCC TTAGTACTTC CCAGAGGCAA CTAGAGCACT GTTGCATGTC TTTTGAAAAC
  AGAAACAAAT AACACAATAA CGATATTTGG AGGGGAGACT CTTCCTCTCC TGGGCTTTGT
  GGCTGTGTGC CCTCTAGAAG CTGACTTCCA GCTCCAGTGA TCTTCTTACA AAGCCTCAGG
  GGGTGATCTG GTTCCCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47284810	NES11570366	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C		C
ss322453649	CHEV_7_141167232	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33330397					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47284810	NES11570366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:133577278 () rs orientation: forward

Symbol	Name	Function Class
5033415L01Rik	RIKEN cDNA 5033415L01 gene	529 bp downstream
Adam12	ADAM metallopeptidase domain 12	within coordinates