rs33330555 SNP Detail

Summary

• ID
  rs33330555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81007539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACCCAA TTAATAAGTA
  GGCTAACCAA ATGAACAGGT AGTGCTCAAA ATTACAAATG GCAAAGTTTT TTTTTTTTAA
  AATCATGAAA AAAAGGTCTA TCTTCACCAG CCATCAGAGA AATGCAAGTC AAAACTACCC
  TGAGTGAGAT TTTATCAGCA GTCTGAGTGT CAGCTATAAA GAACACAAAC ACGGGTATCC
  R
  ATGCTGGCAG AATGTGGACA ACAAGGAGGG ACCTTATCCA CTGTGGGTGG GATGGGAGTG
  TGAGCCAGTC CAGATTCTAT GAGAATCTGA ATGGAGGTTT ATCACAGGAC TTAAAATACC
  GGACTGGAGA GATGGCACAG TCAGTGGTAA AGAGAACTTT CGGCTCCTCC AGAGGATCCA
  CGTTTGGTTC CAGCACCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39522842	mCV22619866	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss146075152	ENSMUSSNP2448443	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33330555					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81007539 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	1662 bp proximal
Tssr149503	transcription start site region 149503	641 bp downstream
Tssr149504	transcription start site region 149504	1897 bp downstream