rs33331638 SNP Detail

Summary

• ID
  rs33331638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166523613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCACAT ATGAATCACA TATGTACATT TTACACATAG
  ATGTTTAGTA TACATACTAC ATAGGGGTGA TTTTGGTTGG GTTTTTTTTT TTTTAATTTT
  K
  TTTGTGAGTG TGTTTGTGTC TGTGTGTGTG TCCCTTCTAA TGAACTAAAC TCAGGTCTTC
  AGGTTTATAC ACCTTTTATT TTTCTGGGCC ATCTCCCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45265991	mCV23066192	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss148258092	ENSMUSSNP5708146	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33331638					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166523613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56395	predicted gene, 56395			381 bp upstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570342	regulatory region 570342			1821 bp distal
Rr570343	regulatory region 570343			1073 bp proximal
Rr570344	regulatory region 570344			1916 bp proximal