rs33331644 SNP Detail

Summary

• ID
  rs33331644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24601043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTAATTT TTCTCTTTTT CTCCTAGTAA TTTATTTTTT
  ATGTACAGTG GTGTTTTGCC TGCACGTATG TCTGTGTGAG GATGTCAGAT ACCCTGGAAC
  W
  GGAGTTACAG ACAGTTGTGA ACTGCCATGT GGATGCTGGG AATTGAACCC TGGTGCTCTG
  GAAGAGCAGG CAGTGCTCTT AACCACTGAG CCATCTCTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45765929	mCV25442783	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss148093056	ENSMUSSNP2432803	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321495672	CHEV_5_23901863	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33331644					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24601043 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	1289 bp distal
Rr112284	regulatory region 112284	158 bp proximal
Rr112285	regulatory region 112285	1358 bp proximal
Rr124925	regulatory region 124925	642 bp distal
Rr398999	regulatory region 398999	1575 bp downstream
Tssr45412	transcription start site region 45412	1615 bp downstream