rs33332979 SNP Detail

Summary

• ID
  rs33332979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100097297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTCTAG AGGGGAGCCT
  AGGAGAGAGG AGCAGCATTT GGGGTGTAAA TAAATATAAT TAATTAATAA ATAATAGTTT
  CTAAACTTGG TCAAATGTAG TGCCATCTGG CAAACATTTT CCTTTCAGTA GAAAGAAACT
  GGACTCCCTT GCCAAACATG GTGATCTGAC TCTGCGCATA TGCGCTTTTA AAATGCTCAC
  R
  TCATGGTTTA TGGGTTGTTC ATGGTTGTTC CTTTCCATAT GGGCCTTGCT AGGATTGGCA
  CCCGGTTGCC TGCGATGCTA ACGGGACTTC TCACACAAAG GCATCGTTTC ATTAATTATT
  AAGTATTCAT TAAGCCCTTG CTAACATAGC CAGCACTGTG CTGGGGTACA TCTAGTAAAA
  CAGAGACTAG CACGATGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46800690	NES10745461	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33332979					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46800690	NES10745461	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100097297 () rs orientation: forward

Symbol	Name	Function Class
Gdap2	ganglioside-induced differentiation-associated-protein 2	within coordinates
Rr64421	regulatory region 64421	within coordinates
Rr69692	regulatory region 69692	within coordinates
Rr82369	regulatory region 82369	140 bp distal