rs33334357 SNP Detail

Summary

• ID
  rs33334357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75928877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCAAAGTC TAACATTGTT TATTCAGGAA ACGATTTCCA
  ACAGTGTCAA GCCCCCACTT GTAAATTCTT CTCCGTCTCC TTGTCTCCAG CATGGCCCCC
  Y
  TGACCTTTCC CTTCTGACTT TCGAATCCAG AGACTCTGGC GGCTGCAGGA TGTGGTCAGT
  GTCGGGGGCA GTACTGGATG TAGTTTATCT TGCTCTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45265356	mCV23800034	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss146770220	ENSMUSSNP231375	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C		T
ss320352649	CHEV_2_75936590	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33334357					SNP	C	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75928877 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1035 bp distal
Rr559648	regulatory region 559648	within coordinates
Rr559649	regulatory region 559649	1063 bp proximal