rs33334657 SNP Detail

Summary

• ID
  rs33334657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57367558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG TCGCGGACCA GTATCTCCCG
  Y
  GCCACTAAAG ATAACGATCA GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39522896	mCV23459036	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145809628	ENSMUSSNP4830195	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33334657					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57367558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	600 bp distal
Cpgi9391	CpG island 9391	within coordinates
Cpgi9392	CpG island 9392	1406 bp proximal
Crb3	crumbs family member 3	1025 bp upstream
Rr405393	regulatory region 405393	96 bp downstream
Rr529260	regulatory region 529260	1443 bp distal
Rr529261	regulatory region 529261	205 bp distal
Rr529262	regulatory region 529262	1183 bp proximal
Rr529263	regulatory region 529263	1752 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	695 bp upstream
Tssr145365	transcription start site region 145365	177 bp upstream
Tssr145366	transcription start site region 145366	1702 bp upstream
Tssr145367	transcription start site region 145367	1759 bp upstream
Tssr145368	transcription start site region 145368	1795 bp upstream
Tssr145369	transcription start site region 145369	1928 bp upstream
Tssr145370	transcription start site region 145370	1967 bp upstream
Tssr148875	transcription start site region 148875	701 bp upstream
Tssr148876	transcription start site region 148876	1431 bp downstream