rs33334734 SNP Detail

Summary

• ID
  rs33334734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100097874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAGCAAG CCTCCAAGAG ACAACAGCCA AACAGGACAA
  AACAAGATAC GATAAGACAA AAGCCCTCAT GTTAAACAGG ACAGGGCAAC CCAACAGAGG
  Y
  TTTTCTTGTT ACATTTTTGT AGTAAGGAAA AATAAGAATA TTCTTTAATT ATGTTGTTTT
  GAATACTTGA TGTTGTAGCC ACTTATCTAT ATAGTCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46800705	NES10745380	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C		C	C		C	T	C		C
ss135538226	ENSMUSSNP5647829	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320848250	CHEV_3_99994481	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33334734					SNP	C	T	T	T	T	T	C	T	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46800705	NES10745380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100097874 () rs orientation: forward

Symbol	Name	Function Class
Gdap2	ganglioside-induced differentiation-associated-protein 2	within coordinates
Rr64421	regulatory region 64421	474 bp distal
Rr69692	regulatory region 69692	274 bp distal
Rr82369	regulatory region 82369	717 bp distal