rs33335090 SNP Detail

Summary

• ID
  rs33335090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156714538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGTTGCT CAGAGAAAAC ACTCATTGAC TTATTAATTT
  GAGTTCAGAC TGAGGTACAT AGAAAGACCT TATCCTCAAA AGAAAGAAAA AAAAGCCAAG
  R
  ATTTAGATAT GTGTATATGA AATATATCCA GGGGAAAGCA GCGGCTCCCA CGGCTGTAAT
  CTGAAGTGTA AAGTGTCTGC TATGCATACA GTGAAATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45266137	mCV25127061	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148084881	ENSMUSSNP6268499	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320582500	CHEV_2_156698354	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33335090					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156714538 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			1759 bp distal
Rr568378	regulatory region 568378			952 bp proximal
Rr568379	regulatory region 568379			1205 bp proximal
Sla2	Src-like-adaptor 2			mRNA-UTR
Tssr21217	transcription start site region 21217			104 bp downstream