rs33335321 SNP Detail

Summary

• ID
  rs33335321
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123830307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG CTATTGACTT GGAGCCTGGT
  M
  TGCTGTTCTA GAGCGTTCAC CCTAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46262941	mCV23468049	ABI	CRAMUS_MOUSE	f	SNP		C	C					A	A
ss50631625	NES14029303	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		A	A		A	A	A	A		A
ss145824482	ENSMUSSNP1309056	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						A
ss322854281	CHEV_8_125627468	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33335321					SNP	A	C	C	C	C	A	C	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50631625	NES14029303	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123830307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	within coordinates
Mir7079	microRNA 7079	1407 bp upstream
Rpl13	ribosomal protein L13	within coordinates
Rr672355	regulatory region 672355	1208 bp distal
Rr672356	regulatory region 672356	1847 bp proximal
Snord68	small nucleolar RNA, C/D box 68	463 bp downstream
Tssr79911	transcription start site region 79911	1217 bp downstream
Tssr79912	transcription start site region 79912	1148 bp downstream
Tssr79913	transcription start site region 79913	1114 bp downstream
Tssr83335	transcription start site region 83335	1288 bp upstream